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Investigating role of conformational changes of microtubule in regulating its binding affinity to kinesin by all-atom molecular dynamics simulation

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成果类型:
期刊论文
作者:
Shi, Xiao-Xuan;Fu, Yi-Ben;Guo, Si-Kao;Wang, Peng-Ye;Chen, Hong;...
通讯作者:
Xie, Ping
作者机构:
[Fu, Yi-Ben; Guo, Si-Kao; Shi, Xiao-Xuan; Wang, Peng-Ye; Xie, Ping] Chinese Acad Sci, Inst Phys, Key Lab Soft Matter Phys, Beijing 100190, Peoples R China.
[Shi, Xiao-Xuan] Cent South Univ Forestry & Technol, Sch Mat Sci & Engn, Changsha, Hunan, Peoples R China.
[Chen, Hong] FoShan Univ, Sch Mat Sci & Energy Engn, Foshan, Guangdong, Peoples R China.
通讯机构:
[Xie, Ping] C
Chinese Acad Sci, Inst Phys, Key Lab Soft Matter Phys, Beijing 100190, Peoples R China.
语种:
英文
关键词:
binding affinity;conformational changes;induced-fit mechanism;kinesin;microtubule;molecular dynamics simulation
期刊:
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
ISSN:
0887-3585
年:
2018
卷:
86
期:
11
页码:
1127-1139
基金类别:
National Key Research and Development Program [2016YFA0301500]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [11775301]
机构署名:
本校为其他机构
院系归属:
材料科学与工程学院
摘要:
Changes of affinity of kinesin head to microtubule regulated by changes in the nucleotide state are essential to processive movement of kinesin on microtubule. Here, using all-atom molecular dynamics simulations we show that besides the nucleotide state, large conformational changes of microtubule-tubulin heterodimers induced by strong interaction with the head in strongly binding state are also indispensable to regulate the affinity of the head to the tubulin. In strongly binding state the high affinity of the head to microtubule arises largely from mutual conformational changes of the microt...

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